Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs7662820 | chr4:3061651 | G/T | 3.31E-5 | 473 | 15.92 | 15 | 16.77 | KM Plot |
| THCA | rs7668684 | chr4:88159940 | A/G | 0.000166 | 490 | 11.73 | 15.62 | 16.2 | KM Plot |
| THCA | rs76688564 | chr2:48088433 | T/G | 5.05E-8 | 489 | 15.23 | 18.9 | 8.27 | KM Plot |
| THCA | rs76699972 | chr6:24429068 | C/T | 5.64E-7 | 482 | 16.33 | 14.92 | 9.25 | KM Plot |
| THCA | rs76706217 | chr11:62588271 | T/C | 7.68E-5 | 488 | 16.2 | 14.48 | 14.27 | KM Plot |
| THCA | rs76708393 | chr4:39451689 | T/A | 5.0E-15 | 488 | 15.9 | 15.63 | 6.1 | KM Plot |
| THCA | rs76709898 | chr1:91702594 | C/T | 9.39E-6 | 478 | 15.9 | 17.08 | 17.77 | KM Plot |
| THCA | rs76722536 | chr6:26192946 | C/G | 2.23E-8 | 490 | 15.7 | 16.63 | 4.75 | KM Plot |
| THCA | rs7674452 | chr4:88160782 | A/G | 1.24E-11 | 490 | 16.47 | 14.93 | 12.93 | KM Plot |
| THCA | rs76756502 | chr9:110649209 | G/A | 0.000211 | 476 | 15.15 | 18.18 | 32.1 | KM Plot |
| THCA | rs7678178 | chr4:110763036 | C/G | 6.11E-5 | 490 | 15.87 | 16.07 | 15.3 | KM Plot |
| THCA | rs7678661 | chr4:1179047 | A/G | 4.29E-6 | 483 | 16.48 | 14.23 | 3.8 | KM Plot |
| THCA | rs76786981 | chr14:59692786 | T/A | 0 | 487 | 15.9 | 16.4 | 3.53 | KM Plot |
| THCA | rs76791955 | chr2:241516241 | C/T | 1.92E-11 | 484 | 15.9 | 14.73 | 19.27 | KM Plot |
| THCA | rs76794708 | chr10:11792999 | G/A | 8.29E-6 | 486 | 15.97 | 15 | 24.22 | KM Plot |